irradiapy.analysis.clusters

Cluster analysis module.

Functions

atom_to_object(aclusters)	Transform atom clusters into object clusters.
clusterize(defects, cutoff)	Identify atom clusters.
clusterize_file(path_defects, cutoff_sia, ...)	Finds defect clusters in the given file.
get_clusters_0d(path_oclusters, path_db[, scale])	Perform a cluster size histogram for interstitials and vacancies.
get_clusters_1d(path_oclusters, path_db[, ...])	Perform a cluster size histogram as a function of depth along a specified axis.
plot_clustering_fraction_1d(db_path[, ...])	Plot the clustering fraction as a function of depth.
plot_mddb_cluster_size(target_dir, ...[, ...])	Plot the cluster size distribution from a molecular dynamics database.
plot_size_1d(db_path[, path_sias, ...])	Plot the depth-size 1D histogram for interstitials and vacancies.
read_clusters_0d(path_db)	Read the 0D cluster size histogram from the database.
read_clusters_1d(path_db[, axis])	Read the 1D cluster size histogram from the database.